PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025925m
Common NameCICLE_v10025925mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 364aa    MW: 40160 Da    PI: 9.5893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025925mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31292349359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Ciclev10025925m 292 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHS 349
                      99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.9E-15240288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.8E-32279349IPR003657WRKY domain
PROSITE profilePS5081130.458285351IPR003657WRKY domain
SuperFamilySSF1182909.68E-27288349IPR003657WRKY domain
SMARTSM007742.1E-38290350IPR003657WRKY domain
PfamPF031067.2E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAVELMMEYG NTSHFTDKVE DCAVQEAASG LESVEKLINL LSQQQQVQQN NSHQSSPSSR  60
SSMDLENDCK AVADVAVSKF KRVISLLGRN RIGHARFRRA PVAAPCVDYQ QNQEKDKNLQ  120
QRQQQEVEVV PETKVYYARP IQQIPPLPPP PRNYHQHEFS TLVVPKNGVD LERKDSATTI  180
NFSNYTSAGN SFLSSLTVTG DNDNKQQPSS SSASATFHFT NLSQQVSSAG KPPLSSSSLK  240
RKCSSASDNL ASAKSCGVSS GRCHCTKKRK SRVKRVVRVP AVSLRLSDIP PDDFSWRKYG  300
QKPIKGSPHP RGYYKCSSVR GCPARKHVER ALDDPSMLVV TYEGEHNHSL SVADTRNLIL  360
ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-212883501576Probable WRKY transcription factor 4
2lex_A5e-212883501576Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.50270.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425967.10.0hypothetical protein CICLE_v10025925mg
SwissprotQ9STX09e-92WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A067GUV30.0A0A067GUV3_CITSI; Uncharacterized protein
TrEMBLV4SF700.0V4SF70_9R
STRINGPOPTR_0005s18490.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.15e-67WRKY DNA-binding protein 15